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1

Genotypic and phenotypic characteristics of antibiotic-producing soil Streptomyces investigated by RAPD-PCR

Raad Gharaibeh, Ismail Saadoun, Amjad Mahasneh

Journal:

Journal of Basic Microbiology

Year:

2003

Language:

english

File:

PDF, 232 KB

english, 2003

2

Stochastic changes over time and not founder effects drive cage effects in microbial community assembly in a mouse model

McCafferty, Jonathan, Mühlbauer, Marcus, Gharaibeh, Raad Z, Arthur, Janelle C, Perez-Chanona, Ernesto, Sha, Wei, Jobin, Christian, Fodor, Anthony A

Journal:

The ISME Journal

Year:

2013

Language:

english

File:

PDF, 1.10 MB

english, 2013

3

Interactions between stress and sex in microbial responses within the microbiota-gut-brain axis to stress in a mouse model

Tsilimigras, Matthew C.B., Gharaibeh, Raad Z., Sioda, Michael, Gray, Laura, Fodor, Anthony A., Lyte, Mark

Journal:

Psychosomatic Medicine

Year:

2018

Language:

english

File:

PDF, 1.48 MB

english, 2018

4

Multiplex PCR for the direct detection of Salmonella enterica from chicken, lamb and beef food products

Hanan Issa Malkawi, Raad Gharaibeh

Journal:

Journal of Basic Microbiology

Year:

2003

Language:

english

File:

PDF, 291 KB

english, 2003

5

Evaluation of combined 16S rDNA and strb1 gene targeted PCR to identify and detect streptomycin-producing Streptomyces

Raad Gharaibeh, Ismail Saadoun, Amjad Mahasneh

Journal:

Journal of Basic Microbiology

Year:

2003

Language:

english

File:

PDF, 229 KB

english, 2003

6

Software Note: Using probe secondary structure information to enhance Affymetrix GeneChip background estimates

Raad Z. Gharaibeh, Anthony A. Fodor, Cynthia J. Gibas

Journal:

Computational Biology and Chemistry

Year:

2007

Language:

english

File:

PDF, 505 KB

english, 2007

7

TheStreptomycesflora of Jordan and its' potential as a source of antibiotics active against antibiotic-resistant Gram-negative bacteria

Ismail Saadoun, Raad Gharaibeh

Journal:

World Journal of Microbiology and Biotechnology

Year:

2002

Language:

english

File:

PDF, 113 KB

english, 2002

8

Background correction using dinucleotide affinities improves the performance of GCRMA

Raad Z Gharaibeh, Anthony A Fodor, Cynthia J Gibas

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 454 KB

english, 2008

9

The Streptomyces flora of Badia region of Jordan and its potential as a source of antibiotics active against antibiotic-resistant bacteria

Ismail Saadoun, Raad Gharaibeh

Journal:

Journal of Arid Environments

Year:

2003

Language:

english

File:

PDF, 81 KB

english, 2003

10

The illusion of specific capture: surface and solution studies of suboptimal oligonucleotide hybridization

Jaishree Garhyan, Raad Z Gharaibeh, Stephen McGee, Cynthia J Gibas

Journal:

BMC Research Notes

Year:

2013

Language:

english

File:

PDF, 336 KB

english, 2013

11

Rapid emergence of a ceftazidime-resistant Burkholderia multivorans strain in a Cystic Fibrosis patient

Stokell, Joshua R., Gharaibeh, Raad Z., Steck, Todd R.

Journal:

Journal of Cystic Fibrosis

Year:

2013

Language:

english

File:

PDF, 306 KB

english, 2013

12

Comparison of culture and molecular techniques for microbial community characterization in infected necrotizing pancreatitis

Hanna, Erin M., Hamp, Timothy J., McKillop, Iain H., Bahrani-Mougeot, Farah, Martinie, John B., Horton, James M., Sindram, David, Gharaibeh, Raad Z., Fodor, Anthony A., Iannitti, David A.

Journal:

Journal of Surgical Research

Year:

2014

Language:

english

File:

PDF, 537 KB

english, 2014

13

317 Iron Supplemented Diet Protects Against Chronic Immune Mediated Colitis in IL-10 Deficient Mice

Ellermann, Melissa, Maharshak, Nitsan, Gharaibeh, Raad, Sha, Wei, Perez-Chanona, Ernesto, Whitehead, Kristi J., Jobin, Christian, Fodor, Anthony, Plevy, Scott E., Sartor, Ryan B.

Journal:

Gastroenterology

Year:

2013

Language:

english

File:

PDF, 51 KB

english, 2013

14

825 Intestinal Inflammation Targets E. Coli NC101 Transcriptome Response and Promotes Development of Colorectal Cancer (CRC)

Muehlbauer, Marcus, Gharaibeh, Raad, Arthur, Janelle C., Fodor, Anthony, Jobin, Christian

Journal:

Gastroenterology

Year:

2013

Language:

english

File:

PDF, 562 KB

english, 2013

15

Microbial genomic analysis reveals the essential role of inflammation in bacteria-induced colorectal cancer

Arthur, Janelle C., Gharaibeh, Raad Z., Mühlbauer, Marcus, Perez-Chanona, Ernesto, Uronis, Joshua M., McCafferty, Jonathan, Fodor, Anthony A., Jobin, Christian

Journal:

Nature Communications

Year:

2014

Language:

english

File:

PDF, 621 KB

english, 2014

16

Mo1769 The Susceptibility to Intestinal Inflammation in IRGM1-Deficient Mice Is Influenced by the Gut Microbiota

Rogala, Allison R., Schoenborn, Alexi A., Cantillana, Viviana, Gharaibeh, Raad, Fodor, Anthony A., Sartor, R. Balfour, Taylor, Gregory A., Gulati, Ajay S.

Journal:

Gastroenterology

Year:

2015

Language:

english

File:

PDF, 425 KB

english, 2015

17

Analysis of Changes in Diversity and Abundance of the Microbial Community in a Cystic Fibrosis Patient over a Multiyear Period

Stokell, Joshua R., Gharaibeh, Raad Z., Hamp, Timothy J., Zapata, Malcolm J., Fodor, Anthony A., Steck, Todd R., Gilligan, P. H.

Journal:

Journal of Clinical Microbiology

Year:

2015

Language:

english

File:

PDF, 814 KB

english, 2015

18

VSL#3 probiotic modifies mucosal microbial composition but does not reduce colitis-associated colorectal cancer

Arthur, Janelle C., Gharaibeh, Raad Z., Uronis, Joshua M., Perez-Chanona, Ernesto, Sha, Wei, Tomkovich, Sarah, Mühlbauer, Marcus, Fodor, Anthony A., Jobin, Christian

Journal:

Scientific Reports

Year:

2013

Language:

english

File:

PDF, 1.09 MB

english, 2013

19

Environmental factors regulate Paneth cell phenotype and host susceptibility to intestinal inflammation in Irgm1-deficient mice

Rogala, Allison R., Schoenborn, Alexi A., Fee, Brian E., Cantillana, Viviana A., Joyce, Maria J., Gharaibeh, Raad Z., Roy, Sayanty, Fodor, Anthony A., Sartor, R. Balfour, Taylor, Gregory A., Gulati, A

Journal:

Disease Models & Mechanisms

Year:

2017

Language:

english

File:

PDF, 1.72 MB

english, 2017

20

Microbiota-derived Metabolic Factors Reduce Campylobacteriosis in Mice

Sun, Xiaolun, Winglee, Kathryn, Gharaibeh, Raad Z., Gauthier, Josee, He, Zhen, Tripathi, Prabhanshu, Avram, Dorina, Bruner, Steven, Fodor, Anthony, Jobin, Christian

Journal:

Gastroenterology

Year:

2018

Language:

english

File:

PDF, 4.81 MB

english, 2018

21

Bcl11b is essential for licensing Th2 differentiation during helminth infection and allergic asthma

Lorentsen, Kyle J., Cho, Jonathan J., Luo, Xiaoping, Zuniga, Ashley N., Urban, Joseph F., Zhou, Liang, Gharaibeh, Raad, Jobin, Christian, Kladde, Michael P., Avram, Dorina

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 1.74 MB

english, 2018

22

Recent urbanization in China is correlated with a Westernized microbiome encoding increased virulence and antibiotic resistance genes

Winglee, Kathryn, Howard, Annie Green, Sha, Wei, Gharaibeh, Raad Z., Liu, Jiawu, Jin, Donghui, Fodor, Anthony A., Gordon-Larsen, Penny

Journal:

Year:

2017

Language:

english

File:

PDF, 1.75 MB

english, 2017

23

Intestinal microbiota enhances pancreatic carcinogenesis in preclinical models

Thomas, Ryan M, Gharaibeh, Raad Z, Gauthier, Josee, Beveridge, Mark, Pope, Jillian L, Guijarro, Maria V, Yu, Qin, He, Zhen, Ohland, Christina, Newsome, Rachel, Trevino, Jose, Hughes, Steven J, Reinhar

Journal:

Year:

2018

Language:

english

File:

PDF, 1.34 MB

english, 2018

24

Application of Equilibrium Models of Solution Hybridization to Microarray Design and Analysis

Gharaibeh, Raad Z., Newton, Joshua M., Weller, Jennifer W., Gibas, Cynthia J., Khodursky, Arkady B.

Journal:

Year:

2010

Language:

english

File:

PDF, 347 KB

english, 2010

25

Prolonged restraint stressor exposure in outbred CD-1 mice impacts microbiota, colonic inflammation, and short chain fatty acids

Maltz, Ross M., Keirsey, Jeremy, Kim, Sandra C., Mackos, Amy R., Gharaibeh, Raad Z., Moore, Cathy C., Xu, Jinyu, Bakthavatchalu, Vasudevan, Somogyi, Arpad, Bailey, Michael T., Chamaillard, Mathias

Journal:

Year:

2018

Language:

english

File:

PDF, 7.75 MB

english, 2018

26

Publisher Correction: Bcl11b is essential for licensing Th2 differentiation during helminth infection and allergic asthma

Lorentsen, Kyle J., Cho, Jonathan J., Luo, Xiaoping, Zuniga, Ashley N., Urban, Joseph F., Zhou, Liang, Gharaibeh, Raad, Jobin, Christian, Kladde, Michael P., Avram, Dorina

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 236 KB

english, 2018

27

Impact of vitamin D depletion during development on mouse sperm DNA methylation

Xue, Jing, Gharaibeh, Raad Z., Pietryk, Edward W., Brouwer, Cory, Tarantino, Lisa M., Valdar, William, Ideraabdullah, Folami Y.

Journal:

Year:

2018

Language:

english

File:

PDF, 4.24 MB

english, 2018

28

Campylobact er jejuni promotes colorectal tumorigenesis through the action of cytolethal distending toxin

He, Zhen, Gharaibeh, Raad Z, Newsome, Rachel C, Pope, Jllian L, Dougherty, Michael W, Tomkovich, Sarah, Pons, Benoit, Mirey, Gladys, Vignard, Julien, Hendrixson, David R, Jobin, Christian

Journal:

Year:

2018

Language:

english

File:

PDF, 6.54 MB

english, 2018

29

Microbiota and cancer immunotherapy: in search of microbial signals

Gharaibeh, Raad Z, Jobin, Christian

Journal:

Year:

2018

Language:

english

File:

PDF, 1.35 MB

english, 2018

30

Dietary iron variably modulates assembly of the intestinal microbiota in colitis-resistant and colitis-susceptible mice

Ellermann, Melissa, Gharaibeh, Raad Z., Maharshak, Nitsan, Peréz-Chanona, Ernesto, Jobin, Christian, Carroll, Ian M., Arthur, Janelle C., Plevy, Scott E, Fodor, Anthony A., Brouwer, Cory R., Sartor, R

Journal:

Year:

2019

Language:

english

File:

PDF, 3.17 MB

english, 2019

31

Dietary iron variably modulates assembly of the intestinal microbiota in colitis-resistant and colitis-susceptible mice

Ellermann, Melissa, Gharaibeh, Raad Z., Maharshak, Nitsan, Peréz-Chanona, Ernesto, Jobin, Christian, Carroll, Ian M., Arthur, Janelle C., Plevy, Scott E, Fodor, Anthony A., Brouwer, Cory R., Sartor, R

Journal:

Year:

2019

File:

PDF, 3.17 MB

2019

32

6 – Intestinal Microbial Functional Content Better Defines Therapeutic Responses to Immune Checkpoint PD-1 Blockade

Gharaibeh, Raad Z., da Silva, Wildson Vieira, Newsome, Rachel, Paul, Shirlene, Hogue, Stephanie, Bowles, Kristina, Robinson, Lary, Antonia, Scott J., Conejo-Garcia, Jose, Pierce, Christine, Jobin, Chr

Journal:

Gastroenterology

Year:

2019

Language:

english

File:

PDF, 549 KB

english, 2019

33

Seaweed natural products modify the host inflammatory response via Nrf2 signaling and alter colon microbiota composition and gene expression

Bousquet, Michelle S., Ratnayake, Ranjala, Pope, Jillian L., Chen, Qi-Yin, Zhu, Fanchao, Chen, Sixue, Carney, Thomas J., Gharaibeh, Raad Z., Jobin, Christian, Paul, Valerie J., Luesch, Hendrik

Journal:

Free Radical Biology and Medicine

Year:

2019

Language:

english

File:

PDF, 2.88 MB

english, 2019

34

Mouse Gut Microbiome-Encoded β-Glucuronidases Identified Using Metagenome Analysis Guided by Protein Structure

Creekmore, Benjamin C., Gray, Josh H., Walton, William G., Biernat, Kristen A., Little, Michael S., Xu, Yongmei, Liu, Jian, Gharaibeh, Raad Z., Redinbo, Matthew R., Turnbaugh, Peter J.

Journal:

Year:

2019

Language:

english

File:

PDF, 2.00 MB

english, 2019

35

Mouse Gut Microbiome-Encoded β-Glucuronidases Identified Using Metagenome Analysis Guided by Protein Structure

Creekmore, Benjamin C., Gray, Josh H., Walton, William G., Biernat, Kristen A., Little, Michael S., Xu, Yongmei, Liu, Jian, Gharaibeh, Raad Z., Redinbo, Matthew R., Turnbaugh, Peter J.

Journal:

Year:

2019

File:

PDF, 2.00 MB

2019

36

Social Stress Affects Colonic Inflammation, the Gut Microbiome, and Short-chain Fatty Acid Levels and Receptors

Maltz, Ross M., Keirsey, Jeremy, Kim, Sandra C., Mackos, Amy R., Gharaibeh, Raad Z., Moore, Cathy C., Xu, Jinyu, Somogyi, Arpad, Bailey, Michael T.

Journal:

Journal of Pediatric Gastroenterology & Nutrition

Year:

2019

File:

PDF, 780 KB

2019

37

Human Colon Mucosal Biofilms and Murine Host Communicate via Altered mRNA and microRNA Expression during Cancer

Tomkovich, Sarah, Gharaibeh, Raad Z., Dejea, Christine M., Pope, Jillian L., Jiang, Jinmai, Winglee, Kathryn, Gauthier, Josee, Newsome, Rachel C., Yang, Ye, Fodor, Anthony A., Schmittgen, Thomas D., S

Journal:

Year:

2020

File:

PDF, 1.10 MB

2020

38

Oral therapy with colonization factor antigen I prevents development of type 1 diabetes in Non-obese Diabetic mice

Nelson, Andrew S., Maddaloni, Massimo, Abbott, Jeffrey R., Hoffman, Carol, Akgul, Ali, Ohland, Christina, Gharaibeh, Raad Z., Jobin, Christian, Brusko, Todd M., Pascual, David W.

Journal:

Scientific Reports

Year:

2020

File:

PDF, 3.79 MB

2020

39

Alterations in mouse spinal cord and sciatic nerve microRNAs after the chronic constriction injury (CCI) model of neuropathic pain

Wilkerson, Jenny L., Jiang, Jinmai, Felix, Jasmine S., Bray, Julie K., da Silva, Lais, Gharaibeh, Raad Z., McMahon, Lance R., Schmittgen, Thomas D.

Journal:

Neuroscience Letters

Year:

2020

File:

PDF, 1008 KB

2020

40

Yersiniabactin-Producing Adherent/Invasive Escherichia coli Promotes Inflammation-Associated Fibrosis in Gnotobiotic Il10 â/â Mice

Ellermann, Melissa, Gharaibeh, Raad Z., Fulbright, Laura, Dogan, Belgin, Moore, Lyndsey N., Broberg, Christopher A., Lopez, Lacey R., Rothemich, Aaron M., Herzog, Jeremy W., Rogala, Allison, Gordon, I

Journal:

Infection and Immunity

Year:

2019

File:

PDF, 3.82 MB

2019

41

Amending microbiota by targeting intestinal inflammation with TNF blockade attenuates development of colorectal cancer

Yang, Ye, Gharaibeh, Raad Z., Newsome, Rachel C., Jobin, Christian

Journal:

Year:

2020

File:

PDF, 11.33 MB

2020

42

Gut microbiota maturation during early human life induces enterocyte proliferation via microbial metabolites

Dougherty, Michael W., Kudin, Oleksandr, MÃ¼hlbauer, Marcus, Neu, Josef, Gharaibeh, Raad Z., Jobin, Christian

Journal:

BMC Microbiology

Year:

2020

File:

PDF, 1.85 MB

2020

43

Baseline Gut Microbiota Composition is Associated with Major Infections Early after Hematopoietic Cell Transplantation

Murthy, Hemant S., Gharaibeh, Raad Z., Al-Mansour, Zeina, Kozlov, Andrew, Trikha, Gaurav, Newsome, Rachel C., Gauthier, Josee, Farhadfar, Nosha, Wang, Yu, Kelly, Debra Lynch, Lybarger, John, Jobin, Ch

Journal:

Biology of Blood and Marrow Transplantation

Year:

2020

File:

PDF, 1.19 MB

2020

44

Structural Insights into Endobiotic Reactivation by Human Gut Microbiome-Encoded Sulfatases

Ervin, Samantha M., Simpson, Joshua B., Gibbs, Morgan E., Creekmore, Benjamin C., Lim, Lauren, Walton, William G., Gharaibeh, Raad Z., Redinbo, Matthew R.

Journal:

Year:

2020

File:

PDF, 6.27 MB

2020